Getting Genetics Done

Getting Things Done in Genetics & Bioinformatics Research

Monday, February 28, 2011

RStudio: New free IDE for R

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Just saw the announcement of the availability of Rstudio , a new (free & open source) integrated development environment for R that wor...
7 comments:
Thursday, February 24, 2011

Split a Data Frame into Testing and Training Sets in R

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I recently analyzed some data trying to find a model that would explain body fat distribution as predicted by several blood biomarkers. I ha...
27 comments:
Tuesday, February 22, 2011

Get all your Questions Answered

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When I have a question I usually ask the internet before bugging my neighbor. Yet it seems like Google's search results have become incr...
8 comments:
Thursday, February 17, 2011

R: Given column name in a Data Frame, Get the Index

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Had a mental block today trying to figure out how to get the indices of columns in a data frame given their names. Simple task but difficult...
4 comments:
Wednesday, February 16, 2011

Summarize Missing Data for all Variables in a Data Frame in R

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Something like this probably already exists in an R package somewhere out there, but I needed a function to summarize how much missing data ...
5 comments:
Tuesday, February 15, 2011

Results from Reference Management Poll

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A while back I asked you what reference management software you used, and how well you liked it. I received 180 responses, and here's w...
Friday, February 11, 2011

Shellfish for Parallel PCA on GWAS data (Alternative to Eigenstrat)

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Recently I tried compiling Eigensoft on my Ubuntu 10.10 Linux system running in Virtualbox and had no success. From comments on this blog po...
9 comments:
Thursday, February 10, 2011

Extracting values from R summary objects

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This builds on a previous post from Stephen. I was recently running a series of ANOVA analyses, and I used the aov() function because it had...
4 comments:
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