Wednesday, November 20, 2013

Using Database Joins to Compare Results Sets

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One of the most powerful tools you can learn to use in genomics research is a relational database system, such as MySQL.  These systems are ...
5 comments:
Wednesday, November 6, 2013

A Mitochondrial Manhattan Plot

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Manhattan plots have become the standard way to visualize results for genetic association studies, allowing the viewer to instantly see sig...
8 comments:
Monday, November 4, 2013

Archival and analysis of #GI2013 Tweets

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I archived and analyzed all Tweets containing #GI2013 from the recent Cold Spring Harbor Genome Informatics meeting, using my previously de...
Thursday, October 31, 2013

Real-time streaming differential RNA-seq analysis with eXpress

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RNA-seq has been performed routinely for at least 5+ years , yet there is no consensus on the best methodology for analyzing this data. For ...
8 comments:
Monday, October 28, 2013

Analysis of #ASHG2013 Tweets

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I archived and anlayzed all Tweets with the hashtag #ASHG2013 using my previously mentioned code . Number of Tweets by date shows Wednesd...
Tuesday, October 22, 2013

PubMed Commons: One post-publication peer review forum to rule them all?

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Several post-publication peer review forums already exist, such as Faculty of 1000 or PubPeer , that facilitate discussion of papers aft...
Monday, October 21, 2013

Useful Unix/Linux One-Liners for Bioinformatics

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Much of the work that bioinformaticians do is munging and wrangling around massive amounts of text. While there are some "standardized...
6 comments:
Thursday, October 10, 2013

De Novo Transcriptome Assembly with Trinity: Protocol and Videos

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One of the clearest advantages RNA-seq has over array-based technology for studying gene expression is not needing a reference genome or a p...