Getting Genetics Done

Getting Things Done in Genetics & Bioinformatics Research

Tuesday, August 28, 2012

More on Exploring Correlations in R

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About a year ago I wrote a post about producing scatterplot matrices in R . These are handy for quickly getting a sense of the correlations ...
18 comments:
Wednesday, August 1, 2012

Cscan: Finding Gene Expression Regulators with ENCODE ChIP-Seq Data

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Recently published in Nucleic Acids Research : F. Zambelli, G. M. Prazzoli, G. Pesole, G. Pavesi, Cscan: finding common regulators of a ...
2 comments:
Tuesday, July 17, 2012

Plotting the Frequency of Twitter Hashtag Usage Over Time with R and ggplot2

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The 20th annual ISMB meeting was held over the last week in Long Beach, CA. It was an incredible meeting with lots of interesting and relev...
8 comments:
Friday, July 6, 2012

Fix Overplotting with Colored Contour Lines

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I saw this plot  in the supplement of a recent paper comparing microarray results to RNA-seq results. Nothing earth-shattering in the paper...
9 comments:
Wednesday, June 27, 2012

Browsing dbGAP Results

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Thanks to the excellent work of Lucia Hindorff and colleagues at NHGRI, the GWAS catalog provides a great reference for the cumulative re...
1 comment:
Thursday, June 21, 2012

Identifying Pathogens in Sequencing Data

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I just read an interesting paper on pathogen discovery using next-generation sequencing data, recommended to me by Nick Loman. A previous...
3 comments:
Monday, June 11, 2012

The HaploREG Database for Functional Annotation of SNPs

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The ENCODE project continues to generate massive numbers of data points on how genes are regulated.  This data will be of incredible use f...
Tuesday, May 29, 2012

How to Stay Current in Bioinformatics/Genomics

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A few folks have asked me how I get my news and stay on top of what's going on in my field, so I thought I'd share my strategy. With...
10 comments:
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