Getting Genetics Done

Getting Things Done in Genetics & Bioinformatics Research

Wednesday, June 27, 2012

Browsing dbGAP Results

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Thanks to the excellent work of Lucia Hindorff and colleagues at NHGRI, the GWAS catalog provides a great reference for the cumulative re...
1 comment:
Thursday, June 21, 2012

Identifying Pathogens in Sequencing Data

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I just read an interesting paper on pathogen discovery using next-generation sequencing data, recommended to me by Nick Loman. A previous...
3 comments:
Monday, June 11, 2012

The HaploREG Database for Functional Annotation of SNPs

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The ENCODE project continues to generate massive numbers of data points on how genes are regulated.  This data will be of incredible use f...
Tuesday, May 29, 2012

How to Stay Current in Bioinformatics/Genomics

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A few folks have asked me how I get my news and stay on top of what's going on in my field, so I thought I'd share my strategy. With...
10 comments:
Wednesday, May 16, 2012

Stepping Outside My Open-Source Comfort Zone: A First Look at Golden Helix SVS

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I'm a huge supporter of the Free and Open Source Software movement. I've written more about R than anything else on this blog, all ...
7 comments:
Friday, May 11, 2012

Video Tip: Use Ensembl BioMart to Quickly Get Ortholog Information

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A few weeks ago I showed you how to convert gene IDs with BioMart . Yesterday I hosted a workshop on the Ensembl Genome Browser, given by Dr...
1 comment:
Tuesday, May 1, 2012

NSF BIGDATA webinar

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If you're doing any kind of big data analysis - genomics, transcriptomics, proteomics, bioinformatics - then unless you've been on v...
Wednesday, April 18, 2012

Awk Command to Count Total, Unique, and the Most Abundant Read in a FASTQ file

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I was reading through a paper on comparative ChIP-Seq when I found this awk gem that lets you get some very basic stats very quickly on next...
10 comments:
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