Getting Genetics Done

Getting Things Done in Genetics & Bioinformatics Research

Wednesday, April 18, 2012

Awk Command to Count Total, Unique, and the Most Abundant Read in a FASTQ file

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I was reading through a paper on comparative ChIP-Seq when I found this awk gem that lets you get some very basic stats very quickly on next...
10 comments:
Friday, April 6, 2012

RNA-Seq Methods & March Twitter Roundup

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There were lots of interesting developments this month that didn't work their way into a full blog post. Here is an incomplete list of w...
6 comments:
Wednesday, March 14, 2012

Video Tip: Convert Gene IDs with Biomart

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I get asked frequently how to convert from one gene identifier to another. This can be tricky, especially when relying on gene symbols, as W...
5 comments:
Tuesday, March 13, 2012

Redesign by Subtraction

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GGD has a new look. I was  inspired by Gina Trapani (Smarterware, Lifehacker) to remove any extra lines, links, and other "ink" t...
2 comments:
Friday, March 9, 2012

find | xargs ... Like a Boss

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*Edit March 12* Be sure to look at the comments, especially the commentary on Hacker News - you can supercharge the find|xargs idea by usi...
9 comments:
Tuesday, March 6, 2012

Pathway Analysis for High-Throughput Genomics Studies

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I get a lot of requests in the core about running a "pathway analysis." Someone ran a handful of gene expression arrays, or better...
11 comments:
Friday, February 24, 2012

I'm Hiring!

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I direct the Bioinformatics Core at the University of Virginia, and I'm hiring. Visit this link on the UVA Jobs website for more infor...
Friday, February 17, 2012

Your Publications (with PMCID) as a PubMed Query

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I'm updating my CV and biosketch for a few grant applications, and for some time now, NIH has required you to include the PubMed Centra...
2 comments:
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