tag:blogger.com,1999:blog-6232819486261696035.post5430870722588840898..comments2023-09-25T09:01:44.323-05:00Comments on Getting Genetics Done: PLINK/SEQ for Analyzing Large-Scale Genome Sequencing DataStephen Turnerhttp://www.blogger.com/profile/06656711316726116187noreply@blogger.comBlogger2125tag:blogger.com,1999:blog-6232819486261696035.post-10038329604159653092011-07-14T19:21:50.555-05:002011-07-14T19:21:50.555-05:00According to their downloads page: "We are ac...According to their downloads page: "We are actively developing an R interface to the PLINK/SEQ library. A beta download will be available shortly."<br /><br />Incidentally, does anyone know if pseq can access VCF files off an ftp server? I want to work with 1000 Genomes VCF files without having to download a local copy.Unknownhttps://www.blogger.com/profile/01696494367778879221noreply@blogger.comtag:blogger.com,1999:blog-6232819486261696035.post-70202206704000453922011-05-06T02:28:21.535-05:002011-05-06T02:28:21.535-05:00Thanks Stephen and Will for your pointing out such...Thanks Stephen and Will for your pointing out such a good tools for analyzing genomic variant data.<br /><br />I have some simple problems I can not get answer by myself. Could you please share any your experiences/tricks with me?<br /><br />It was said in the Plink/seq website that "the PLINK/Seq library can be compiled as an R extension library (and is available for download)". That is very attractive. But,<br /><br />(1) I can not find a R library of plink/seq, in the download page. How can I get it? Also, after I installed plink/seq, and I can notfind R library in the installation folder of that.<br />http://atgu.mgh.harvard.edu/plinkseq/download.shtml<br /><br />(2) Do you think they have not release the R library, although they said they has done it?<br />http://atgu.mgh.harvard.edu/plinkseq/r-intro.shtml#configAnonymoushttps://www.blogger.com/profile/06764820974461316133noreply@blogger.com