tag:blogger.com,1999:blog-6232819486261696035.post6919482616312474516..comments2023-09-25T09:01:44.323-05:00Comments on Getting Genetics Done: Identifying Pathogens in Sequencing DataStephen Turnerhttp://www.blogger.com/profile/06656711316726116187noreply@blogger.comBlogger3125tag:blogger.com,1999:blog-6232819486261696035.post-85006534496462389232013-01-28T11:07:04.570-06:002013-01-28T11:07:04.570-06:00I never understood the alignment disease. Just sor...I never understood the alignment disease. Just sort the kmers and focus on unexpected missing or present kmers. A few terabytes of kmer sequence from GenBank should be enough to bootstrap what is or isn't expected.Chad Brewbakerhttps://www.blogger.com/profile/10443154815748267611noreply@blogger.comtag:blogger.com,1999:blog-6232819486261696035.post-43245746199517701872013-01-01T15:58:40.895-06:002013-01-01T15:58:40.895-06:00I think there is level of uncertainty about what s...I think there is level of uncertainty about what sequence is human and whats not. How much of this variability between individuals is not clear. Anonymousnoreply@blogger.comtag:blogger.com,1999:blog-6232819486261696035.post-52494336334250420402012-06-21T23:15:44.897-05:002012-06-21T23:15:44.897-05:00An even quicker way might be to use Chaos Game Rep...An even quicker way might be to use Chaos Game Representation, which not only provides pretty pictures, but can also distinguish vertebrate and non-vertebrate DNA quite handily. Short reads might compromise the quality though.Andreas Klostermannhttp://andreasklostermann.denoreply@blogger.com